EMBOSS

NUCLEIC 2D STRUCTURE

Nucleic acid secondary structure

Program name Description

cmsearchrfam Scans nucleic acids for RNA genes and conserved motifs using Rfam

einverted Finds inverted repeats in nucleotide sequences

hybridize Prediction of hybridization between nucleic acid sequences, with consideration of secondary structure

unafold Prediction of optimal and suboptimal RNA or DNA secondary structure

Program name	Description
cmsearchrfam	Scans nucleic acids for RNA genes and conserved motifs using Rfam
einverted	Finds inverted repeats in nucleotide sequences
hybridize	Prediction of hybridization between nucleic acid sequences, with consideration of secondary structure
unafold	Prediction of optimal and suboptimal RNA or DNA secondary structure