PROTEIN PROFILES

Protein profile generation and searching

Program name	Description
iprscan	Scans proteins or nucleic acids for conserved motifs using Interpro tools
pfmake	Creates PROSITE style profile from protein multiple alignment
profit	Scan one or more sequences with a simple frequency matrix
prophecy	Create frequency matrix or profile from a multiple alignment
prophet	Scan one or more sequences with a Gribskov or Henikoff profile
ps_scan	Scans proteins for conserved motifs using PROSITE (patterns and profiles)
psiblast	Iterative BLAST search with generation of profile of protein sequence against protein sequence set