| nr Protein and DNA |
| Entrez |
Retrieval system for searching several linked non-redundant databases |
| RefSeq |
NCBI sequence standards for chromosome segments, mRNAs and proteins |
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| General DNA |
| EMBL |
European Nucleotide Sequence Database |
| GenBank |
USA Nucleotide Sequence Database |
| DDBJ |
DNA database of Japan |
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| General Protein |
| SWISSPROT |
European Protein Database, very well annoted |
| TrEMBL |
European (translated EMBL)protein database |
| PIR |
Protein Information Resource |
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| Human |
| Acembly |
Acedb views of human genome - NCBI |
| Ensembl |
Annotated human genome sequences |
| Human Genome Browser |
Draft assembly of the human genome from UCSC Genome team |
| The Human Genome |
The Human Genome resources at the NCBI |
| HGMD |
The Human Gene Mutation Database |
| GDB |
Canada "Mother site" Information database on Human genome |
| MIPS |
Protein sequences from human, Arabidopsis, Yeast & Neurospora |
| OMIM |
Online Mendelian Inheritance in Man |
| PharmGKB |
Integrated resource about how variation in human genes leads to variation in our response to drugs |
| UniGene |
Human, rat and mouse sequences, grouped by gene |
| Repbase |
Repetitive DNA from different eukaryotic species |
| IMGT/LIGM |
The international ImMunoGeneTics database |
| IMGT/HLA |
Databases for sequences of the human major histocompatibility complex |
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| Other Eukaryotes |
| TIGR |
The institute For Genomic Research: Plants, Parasites, Mouse, Micro-organisms |
| Axeldb |
Xenopus laevis Database |
| Flybase |
Drosophila Genome Database |
| HOVERGEN |
Vertebrate genes classified by protein families |
| MGI |
Mouse Genome Informatics |
| TAIR DB |
Arabidopsis Database |
| WormBase |
C. elegans nematode database |
| ZFIN |
The Zebrafish Information Network |
| Repbase |
Repetitive DNA from different eukaryotic species |
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| Micro-organisms |
| BCCM |
Belgian Co-ordinated Collections of Micro-organisms |
| TIGR |
Microbial genomes and chromosomes |
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| Vectors |
| UniVec |
Vectors subset from GenBank |
| EMVec |
Sous-set de vecteurs de EMBL. Testez votre séquence pour contamination par vecteur |
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| Virus |
| Aidsbase |
Database containing data on HIV and SIV |
| STDSD |
molecular information papillomavirus and other sexually transmitted bacteria and viruses |
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| Protein Structures & Small Molecules |
| PDB |
Protein structures Database |
| CATH |
Protein Structure Classification |
| CSD |
Small molecule structure Database |
| DSSP FSSP HSSP |
Database of Secondary Structure in Proteins |
| SCOP |
Structural Classification of Proteins |
| NDB |
Nucleic acid structure database |
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| Protein Motifs |
| InterPro |
Non-redundant protein motifs database |
| Blocks+ |
Protein motifs database using Position-specific weight Matrices |
| eMOTIF |
Motifs database using permissive regular expressions |
| PROSITE |
Protein motifs database using patterns and profiles |
| Pfam |
Protein motifs database using Hidden Markov models |
| ProDom |
Family-cluster database |
| PRINTS |
Protein motifs database using frequency matrices |
| SMART |
Motifs database for evolutionary conserved domains |
| TIGRFAMs |
protein families based on HMMs, used by TIGR for genomes annotation |
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| DNA Motifs |
| EPD |
RNA polymerase II promotors |
| Rebase |
Database of restriction sites |
| TFD |
Transcription factor binding sites database |
| TRANSFAC |
Database on eucaryotic transcription factors, their genomic binding sites and DNA binding profiles |
| TRRD |
Information transcription regulatory regions of eukaryotic genes |
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| Metabolism |
| BioCyc |
Genome and metabolic pathways of E. coli |
| KEGG |
Kyoto Encyclopedia of Genes and Genomes in terms of information pathways |
| RegulonDB |
Transcriptional Regulation and Genome Organization |
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| Onthology |
| Taxonomy |
Organisms classification database |
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