| Sequence Submission |
| Webin |
Direct submission to EMBL |
|
|
| Searching by similarity |
| BEAUTY |
Blast on proteins + graphical output |
| BLAST-NCBI |
Sequence similarity searching |
| BLAST-EBI |
Sequence similarity searching at the EBI |
| FASTA |
Sequence similarity searching |
| FASTA-EBI |
Sequence similarity searching at the EBI |
| SWsrch |
Sequence searching using Smith-Waterman algorithm |
|
|
| Comparative Genomics |
| Vista |
Set of tools for comparative genomics, designed to visualize long sequence alignments of DNA from two or more species with annotation information
|
| PipMaker |
Computes alignments of similar regions in two DNA sequences and allows to see relationships among more than two sequences (uses Blastz)
|
|
|
| Sequence Analysis |
| EMBOSS |
Sequence analysis package |
| wEMBOSS |
The wEMBOSS Web User interface for the Sequence Analysis Package EMBOSS |
| GCG |
Commercial sequence analysis package |
| Staden |
Sequence analysis package |
|
|
| Multiple Sequence Alignement |
| CLUSTAL |
Multiple sequence alignement |
| Match-Box |
Protein sequence multiple alignment tool |
|
|
| Gene Prediction |
| GeneMark |
Gene prediction |
| GENSCAN |
Gene prediction |
| Grail |
Prediction of exons, genes, promoters, polyas |
|
|
| Protein Analysis |
| Dali |
Service for comparing protein structures in 3D |
| ESyPred3D |
New automated homology modeling program getting benefit of the increased performances of an alignment strategy using neural networks
|
| Pratt |
Protein motif discovery |
|
|
